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chka choline kinase alpha [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103034834, updated on 12-Sep-2024

Summary

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Gene symbol
chka
Gene description
choline kinase alpha
See related
EnsemblRapid:ENSAMXG00025036908
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
zebrafish all
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Genomic context

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See chka in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 9 NC_064416.1 (25156111..25174780)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 18 NC_035914.1 (18472936..18491526)

Chromosome 9 - NC_064416.1Genomic Context describing neighboring genes Neighboring gene F-box protein Neighboring gene lysine methyltransferase 5B Neighboring gene synaptotagmin XIX Neighboring gene SDR family oxidoreductase Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethanolamine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-choline pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline kinase alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064416.1 Reference AstMex3_surface

    Range
    25156111..25174780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007256233.4 → XP_007256295.3  choline kinase alpha isoform X1

    UniProtKB/TrEMBL
    W5LN55
    Related
    ENSAMXP00025064320.1, ENSAMXT00025081395.1

  2. XM_015607592.3 → XP_015463078.3  choline kinase alpha isoform X2

    UniProtKB/TrEMBL
    A0A3B1JF94
    Related
    ENSAMXP00025064323.1, ENSAMXT00025081401.1
Nucleotide Protein
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