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slc46a1 solute carrier family 46 member 1 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103029949, updated on 11-Mar-2024

Summary

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Gene symbol
slc46a1
Gene description
solute carrier family 46 member 1
See related
EnsemblRapid:ENSAMXG00025019121
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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See slc46a1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
8
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 18 NC_064425.1 (25328056..25387350)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 1 NC_035897.1 (11258446..11279177)

Chromosome 18 - NC_064425.1Genomic Context describing neighboring genes Neighboring gene unc-119 lipid binding chaperone a1 Neighboring gene forkhead box N1 Neighboring gene sterile alpha and TIR motif containing 1 Neighboring gene ankyrin repeat and MYND domain containing 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proton-coupled folate transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064425.1 Reference AstMex3_surface

    Range
    25328056..25387350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049466857.1 → XP_049322814.1  proton-coupled folate transporter

    UniProtKB/TrEMBL
    A0A8T2L1D6

  2. XM_049466858.1 → XP_049322815.1  proton-coupled folate transporter

    UniProtKB/TrEMBL
    A0A8T2L1D6

  3. XM_049466856.1 → XP_049322813.1  proton-coupled folate transporter

    UniProtKB/TrEMBL
    A0A8T2L1D6
    Related
    ENSAMXP00025024445.1, ENSAMXT00025035057.1
Nucleotide Protein
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