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slc40a1 solute carrier family 40 member 1 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103025312, updated on 6-Jun-2024

Summary

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Gene symbol
slc40a1
Gene description
solute carrier family 40 member 1
See related
EnsemblRapid:ENSAMXG00025030359
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 11 NC_064418.1 (43485256..43499884, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 19 NC_035915.1 (4872925..4887416)

Chromosome 11 - NC_064418.1Genomic Context describing neighboring genes Neighboring gene signal transducer and activator of transcription 4 Neighboring gene WD repeat domain 75 Neighboring gene uncharacterized LOC103025618 Neighboring gene asparagine synthetase domain containing 1 Neighboring gene ankyrin and armadillo repeat containing Neighboring gene O-sialoglycoprotein endopeptidase-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptide hormone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in iron ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 40 member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064418.1 Reference AstMex3_surface

    Range
    43485256..43499884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007253239.4 → XP_007253301.3  solute carrier family 40 member 1

    UniProtKB/TrEMBL
    A0A3B1J916, A0A8B9K3Z0
    Related
    ENSAMXP00025049332.1, ENSAMXT00025063635.1
Nucleotide Protein
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