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SPRTN SprT-like N-terminal domain [ Balaenoptera acutorostrata (minke whale) ]

Gene ID: 103004771, updated on 6-Jun-2024

Summary

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Gene symbol
SPRTN
Gene description
SprT-like N-terminal domain
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera acutorostrata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human mouse all
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Genomic context

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See SPRTN in Genome Data Viewer
Location:
chromosome: 16
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_06 current mBalAcu1.1 (GCF_949987535.1) 16 NC_080079.1 (73230274..73242592)
101 previous assembly BalAcu1.0 (GCF_000493695.1) Unplaced Scaffold NW_006725976.1 (2643881..2656167, complement)

Chromosome 16 - NC_080079.1Genomic Context describing neighboring genes Neighboring gene transmembrane emp24 domain-containing protein 2-like Neighboring gene exocyst complex component 8 Neighboring gene egl-9 family hypoxia inducible factor 1 Neighboring gene translin associated factor X

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-dependent metalloprotease SPRTN

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949987535.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalAcu1.1

Genomic

  1. NC_080079.1 Reference mBalAcu1.1

    Range
    73230274..73242592
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057530651.1 → XP_057386634.1  DNA-dependent metalloprotease SPRTN isoform X1

    UniProtKB/TrEMBL
    A0A383ZG37

  2. XM_007173772.3 → XP_007173834.2  DNA-dependent metalloprotease SPRTN isoform X1

    UniProtKB/TrEMBL
    A0A383ZG37

  3. XM_007173776.3 → XP_007173838.1  DNA-dependent metalloprotease SPRTN isoform X5

    UniProtKB/TrEMBL
    A0A383ZF98
    Conserved Domains (1) summary
    pfam10263
    Location:56 → 224
    SprT-like; SprT-like family

  4. XM_007173773.3 → XP_007173835.2  DNA-dependent metalloprotease SPRTN isoform X2

    UniProtKB/TrEMBL
    A0A383ZF96

  5. XM_057530653.1 → XP_057386636.1  DNA-dependent metalloprotease SPRTN isoform X4

    UniProtKB/TrEMBL
    A0A383ZFG3

  6. XM_057530652.1 → XP_057386635.1  DNA-dependent metalloprotease SPRTN isoform X3

    UniProtKB/TrEMBL
    A0A383ZFG3

  7. XM_007173775.3 → XP_007173837.2  DNA-dependent metalloprotease SPRTN isoform X4

    UniProtKB/TrEMBL
    A0A383ZFG3
Nucleotide Protein
Heading Accession and Version

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