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COL5A1 collagen type V alpha 1 chain [ Balaenoptera acutorostrata (minke whale) ]

Gene ID: 103003379, updated on 6-Jun-2024

Summary

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Gene symbol
COL5A1
Gene description
collagen type V alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera acutorostrata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
67
Annotation release Status Assembly Chr Location
RS_2023_06 current mBalAcu1.1 (GCF_949987535.1) 6 NC_080069.1 (122519469..122679869, complement)
101 previous assembly BalAcu1.0 (GCF_000493695.1) Unplaced Scaffold NW_006732900.1 (12066613..12197551)

Chromosome 6 - NC_080069.1Genomic Context describing neighboring genes Neighboring gene ficolin-1 Neighboring gene ficolin 2 Neighboring gene retinoid X receptor alpha Neighboring gene uncharacterized LOC130708468

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(V) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949987535.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalAcu1.1

Genomic

  1. NC_080069.1 Reference mBalAcu1.1

    Range
    122519469..122679869 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057549408.1 → XP_057405391.1  collagen alpha-1(V) chain isoform X3

    UniProtKB/TrEMBL
    A0A384B539

  2. XM_057549407.1 → XP_057405390.1  collagen alpha-1(V) chain isoform X2

    UniProtKB/TrEMBL
    A0A384B539

  3. XM_057549405.1 → XP_057405388.1  collagen alpha-1(V) chain isoform X1

    UniProtKB/TrEMBL
    A0A384B539
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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