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PHF19 PHD finger protein 19 [ Physeter catodon (sperm whale) ]

Gene ID: 102980617, updated on 10-Mar-2024

Summary

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Gene symbol
PHF19
Gene description
PHD finger protein 19
See related
Ensembl:ENSPCTG00005017799
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 9 NC_041222.1 (5147667..5169865)
102 previous assembly ASM283717v2 (GCF_002837175.2) 9 NC_041222.1 (5142660..5169876)

Chromosome 9 - NC_041222.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114486837 Neighboring gene TNF receptor associated factor 1 Neighboring gene protein CutA homolog Neighboring gene proteasome 26S subunit, non-ATPase 5 Neighboring gene beta-1,3-galactosyltransferase 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041222.1 Reference ASM283717v5 Primary Assembly

    Range
    5147667..5169865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055086999.1 → XP_054942974.1  PHD finger protein 19 isoform X1

    UniProtKB/TrEMBL
    A0A9W2WUN9

  2. XM_028493583.2 → XP_028349384.1  PHD finger protein 19 isoform X3

    UniProtKB/TrEMBL
    A0A455BKJ0
    Conserved Domains (4) summary
    smart00333
    Location:60 → 109
    TUDOR; Tudor domain
    cd15579
    Location:120 → 172
    PHD1_PHF19; PHD finger 1 found in PHD finger protein 19 (PHF19)
    cd15581
    Location:219 → 270
    PHD2_PHF19; PHD finger 2 found in PHD finger protein 19 (PHF19)
    pfam14061
    Location:552 → 577
    Mtf2_C; Polycomb-like MTF2 factor 2

  3. XM_028493579.2 → XP_028349380.1  PHD finger protein 19 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9T188
    Related
    ENSPCTP00005024997.1, ENSPCTT00005027531.1
    Conserved Domains (4) summary
    smart00333
    Location:60 → 109
    TUDOR; Tudor domain
    cd15579
    Location:120 → 172
    PHD1_PHF19; PHD finger 1 found in PHD finger protein 19 (PHF19)
    cd15581
    Location:219 → 270
    PHD2_PHF19; PHD finger 2 found in PHD finger protein 19 (PHF19)
    pfam14061
    Location:552 → 598
    Mtf2_C; Polycomb-like MTF2 factor 2
Nucleotide Protein
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