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SEC13 SEC13 homolog, nuclear pore and COPII coat complex component [ Physeter catodon (sperm whale) ]

Gene ID: 102979658, updated on 10-Mar-2024

Summary

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Gene symbol
SEC13
Gene description
SEC13 homolog, nuclear pore and COPII coat complex component
See related
Ensembl:ENSPCTG00005007576
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 18 NC_041231.1 (10926720..10974817)
102 previous assembly ASM283717v2 (GCF_002837175.2) 18 NC_041231.1 (10926758..10974817)

Chromosome 18 - NC_041231.1Genomic Context describing neighboring genes Neighboring gene plasma membrane calcium-transporting ATPase 2-like Neighboring gene plasma membrane calcium-transporting ATPase 2-like Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene ghrelin and obestatin prepropeptide Neighboring gene TatD DNase domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPII-coated vesicle budding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of TOR signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein exit from endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore outer ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SEC13 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041231.1 Reference ASM283717v5 Primary Assembly

    Range
    10926720..10974817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024123977.3 → XP_023979745.1  protein SEC13 homolog

    UniProtKB/TrEMBL
    A0A2Y9STD9
    Related
    ENSPCTP00005010682.1, ENSPCTT00005011824.1
    Conserved Domains (2) summary
    sd00039
    Location:17 → 55
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:10 → 289
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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