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COL5A2 collagen type V alpha 2 chain [ Physeter catodon (sperm whale) ]

Gene ID: 102976978, updated on 10-Mar-2024

Summary

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Gene symbol
COL5A2
Gene description
collagen type V alpha 2 chain
See related
Ensembl:ENSPCTG00005016567
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
54
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 2 NC_041215.1 (93568570..93718982, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 2 NC_041215.1 (93571092..93718979, complement)

Chromosome 2 - NC_041215.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L35a-like Neighboring gene collagen type III alpha 1 chain Neighboring gene uncharacterized LOC114484342 Neighboring gene WD repeat domain 75

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in skin development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen type V trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-2(V) chain
Names
collagen, type V, alpha 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041215.1 Reference ASM283717v5 Primary Assembly

    Range
    93568570..93718982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007108047.4 → XP_007108109.1  collagen alpha-2(V) chain

    UniProtKB/TrEMBL
    A0A2Y9ESY3
    Related
    ENSPCTP00005024423.1, ENSPCTT00005026919.1
    Conserved Domains (3) summary
    pfam01391
    Location:495 → 553
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:41 → 96
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1267 → 1498
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
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