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PCDH9 protocadherin 9 [ Panthera tigris (tiger) ]

Gene ID: 102962807, updated on 10-Mar-2024

Summary

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Gene symbol
PCDH9
Gene description
protocadherin 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: A1
Exon count:
13
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) A1 NC_056660.1 (41159454..42081881, complement)

Chromosome A1 - NC_056660.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122230995 Neighboring gene uncharacterized LOC122230993 Neighboring gene uncharacterized LOC122231001 Neighboring gene uncharacterized LOC122236553 Neighboring gene uncharacterized LOC122231002 Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056660.1 Chromosome A1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056660.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    41159454..42081881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042977843.1 → XP_042833777.1  protocadherin-9 isoform X3

    Conserved Domains (2) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 1000
    Protocadherin

  2. XM_042977836.1 → XP_042833770.1  protocadherin-9 isoform X2

    Conserved Domains (2) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 1000
    Protocadherin

  3. XM_042977825.1 → XP_042833759.1  protocadherin-9 isoform X1

    UniProtKB/TrEMBL
    A0A8C9J115
    Conserved Domains (2) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:777 → 1000
    Protocadherin

  4. XM_042977849.1 → XP_042833783.1  protocadherin-9 isoform X4

    Conserved Domains (1) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain

  5. XM_042977859.1 → XP_042833793.1  protocadherin-9 isoform X4

    Conserved Domains (1) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain

  6. XM_042977878.1 → XP_042833812.1  protocadherin-9 isoform X6

    Conserved Domains (1) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain

  7. XM_042977891.1 → XP_042833825.1  protocadherin-9 isoform X7

    Conserved Domains (1) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain

  8. XM_042977868.1 → XP_042833802.1  protocadherin-9 isoform X5

    Conserved Domains (1) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain

  9. XM_015536796.2 → XP_015392282.2  protocadherin-9 isoform X8

    Conserved Domains (1) summary
    cd11304
    Location:576 → 671
    Cadherin_repeat; Cadherin tandem repeat domain

RNA

  1. XR_006214593.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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