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ARID4A AT-rich interaction domain 4A [ Panthera tigris (tiger) ]

Gene ID: 102957640, updated on 10-Mar-2024

Summary

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Gene symbol
ARID4A
Gene description
AT-rich interaction domain 4A
See related
Ensembl:ENSPTIG00000007597
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: B3
Exon count:
24
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) B3 NC_056665.1 (104757133..104820584)

Chromosome B3 - NC_056665.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene uncharacterized LOC102958226 Neighboring gene proteasome 20S subunit alpha 3 Neighboring gene 10 kDa heat shock protein, mitochondrial-like Neighboring gene translocase of outer mitochondrial membrane 20 like Neighboring gene translocase of inner mitochondrial membrane 9 Neighboring gene KIAA0586 ortholog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056665.1 Chromosome B3 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 4A
Names
AT rich interactive domain 4A (RBP1-like)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056665.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    104757133..104820584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015543400.2 → XP_015398886.2  AT-rich interactive domain-containing protein 4A isoform X1

    UniProtKB/TrEMBL
    A0A8C9JHB0
    Conserved Domains (3) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    cd16882
    Location:311 → 397
    ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
    cd18641
    Location:577 → 635
    CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins

  2. XM_007095239.3 → XP_007095301.2  AT-rich interactive domain-containing protein 4A isoform X2

    UniProtKB/TrEMBL
    A0A8C9JHB0
    Conserved Domains (3) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    cd16882
    Location:311 → 397
    ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
    cd18641
    Location:577 → 635
    CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins

  3. XM_042989796.1 → XP_042845730.1  AT-rich interactive domain-containing protein 4A isoform X1

    UniProtKB/TrEMBL
    A0A8C9JHB0
    Conserved Domains (3) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    cd16882
    Location:311 → 397
    ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
    cd18641
    Location:577 → 635
    CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
Nucleotide Protein
Heading Accession and Version

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