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SPTLC3 serine palmitoyltransferase long chain base subunit 3 [ Panthera tigris (tiger) ]

Gene ID: 102956963, updated on 19-Jun-2024

Summary

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Gene symbol
SPTLC3
Gene description
serine palmitoyltransferase long chain base subunit 3
See related
Ensembl:ENSPTIG00000006815
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: A3
Exon count:
12
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) A3 NC_056662.1 (38247046..38378390)

Chromosome A3 - NC_056662.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102957224 Neighboring gene 60S ribosomal protein L31-like Neighboring gene isthmin 1 Neighboring gene taspase 1 Neighboring gene ESF1 nucleolar pre-rRNA processing protein homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056662.1 Chromosome A3 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056662.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    38247046..38378390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007086809.3 → XP_007086871.1  serine palmitoyltransferase 3

    UniProtKB/TrEMBL
    A0A8C9J8S4
    Related
    ENSPTIP00000004262.1
    Conserved Domains (1) summary
    cl18945
    Location:57 → 549
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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