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PRDM4 PR/SET domain 4 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102946572, updated on 10-Mar-2024

Summary

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Gene symbol
PRDM4
Gene description
PR/SET domain 4
Locus tag
UY3_13004
See related
EnsemblRapid:ENSCMYG00015023415
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 1 NC_057849.1 (251594841..251621869, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 1 NC_051241.1 (251594604..251621722, complement)

Chromosome 1 - NC_057849.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and BTB domain containing 3 Neighboring gene uncharacterized LOC122464960 Neighboring gene PWP1 homolog, endonuclein Neighboring gene achaete-scute family bHLH transcription factor 4 Neighboring gene RNA 2',3'-cyclic phosphate and 5'-OH ligase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone methyltransferase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057849.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    251594841..251621869 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043542366.1 → XP_043398301.1  PR domain zinc finger protein 4 isoform X2

    UniProtKB/TrEMBL
    M7AYU7
    Conserved Domains (4) summary
    COG5048
    Location:593 → 731
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:644 → 664
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam18445
    Location:389 → 426
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19189
    Location:429 → 561
    PR-SET_PRDM4; PR-SET domain found in PR domain zinc finger protein 4 (PRDM4) and similar proteins

  2. XM_043542362.1 → XP_043398297.1  PR domain zinc finger protein 4 isoform X1

    UniProtKB/TrEMBL
    M7AYU7
    Conserved Domains (4) summary
    COG5048
    Location:600 → 738
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:651 → 671
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam18445
    Location:389 → 426
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19189
    Location:429 → 568
    PR-SET_PRDM4; PR-SET domain found in PR domain zinc finger protein 4 (PRDM4) and similar proteins

  3. XM_037880340.2 → XP_037736268.1  PR domain zinc finger protein 4 isoform X4

    UniProtKB/TrEMBL
    M7AYU7
    Conserved Domains (4) summary
    sd00017
    Location:623 → 643
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam18445
    Location:361 → 398
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19189
    Location:401 → 540
    PR-SET_PRDM4; PR-SET domain found in PR domain zinc finger protein 4 (PRDM4) and similar proteins
    pfam13465
    Location:635 → 660
    zf-H2C2_2; Zinc-finger double domain

  4. XM_027828430.3 → XP_027684231.2  PR domain zinc finger protein 4 isoform X3

    UniProtKB/TrEMBL
    M7AYU7
    Related
    ENSCMYP00015035647.1, ENSCMYT00015043987.1
    Conserved Domains (5) summary
    COG5048
    Location:590 → 728
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:641 → 661
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam18445
    Location:379 → 416
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19189
    Location:419 → 558
    PR-SET_PRDM4; PR-SET domain found in PR domain zinc finger protein 4 (PRDM4) and similar proteins
    pfam13465
    Location:653 → 678
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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