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PDE1A phosphodiesterase 1A [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102943594, updated on 10-Mar-2024

Summary

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Gene symbol
PDE1A
Gene description
phosphodiesterase 1A
Locus tag
UY3_16552
See related
EnsemblRapid:ENSCMYG00015017202
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See PDE1A in Genome Data Viewer
Location:
chromosome: 11
Exon count:
21
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 11 NC_051251.2 (46643911..47017510, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 11 NC_051251.1 (32622196..32877560)

Chromosome 11 - NC_051251.2Genomic Context describing neighboring genes Neighboring gene ITPR interacting domain containing 2 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 1C Neighboring gene DnaJ heat shock protein family (Hsp40) member C10 Neighboring gene uncharacterized LOC122462285 Neighboring gene frizzled related protein Neighboring gene NCK associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A
Names
Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051251.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    46643911..47017510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043524996.1 → XP_043380931.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1

    UniProtKB/TrEMBL
    M7B2P3
    Conserved Domains (1) summary
    cd00077
    Location:219 → 390
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  2. XM_043525003.1 → XP_043380938.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X7

    Conserved Domains (1) summary
    cd00077
    Location:202 → 373
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  3. XM_043525004.1 → XP_043380939.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X8

    Related
    ENSCMYP00015026275.1, ENSCMYT00015032329.1
    Conserved Domains (1) summary
    cd00077
    Location:219 → 390
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  4. XM_043525001.1 → XP_043380936.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X5

    Related
    ENSCMYP00015026269.1, ENSCMYT00015032321.1
    Conserved Domains (1) summary
    cd00077
    Location:219 → 390
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  5. XM_043525002.1 → XP_043380937.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X6

    Related
    ENSCMYP00015026264.1, ENSCMYT00015032314.1
    Conserved Domains (2) summary
    cd00077
    Location:202 → 373
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
    pfam16228
    Location:493 → 616
    DUF4887; Domain of unknown function (DUF4887)

  6. XM_043525000.1 → XP_043380935.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X4

    Related
    ENSCMYP00015026283.1, ENSCMYT00015032338.1
    Conserved Domains (2) summary
    cd00077
    Location:219 → 390
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
    pfam16228
    Location:510 → 633
    DUF4887; Domain of unknown function (DUF4887)

  7. XM_043524998.1 → XP_043380933.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X3

    Conserved Domains (1) summary
    cd00077
    Location:219 → 390
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

  8. XM_043524997.1 → XP_043380932.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X2

    UniProtKB/TrEMBL
    M7B2P3
    Conserved Domains (1) summary
    cd00077
    Location:202 → 373
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
Nucleotide Protein
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