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PKP1 plakophilin 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102942653, updated on 10-Mar-2024

Summary

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Gene symbol
PKP1
Gene description
plakophilin 1
Locus tag
UY3_01814
See related
EnsemblRapid:ENSCMYG00015003619
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
14
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 21 NC_051261.2 (16002569..16053592, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 24 NC_051264.1 (2801238..2852083)

Chromosome 21 - NC_051261.2Genomic Context describing neighboring genes Neighboring gene ladinin 1 Neighboring gene troponin T2, cardiac type Neighboring gene uncharacterized LOC122463488 Neighboring gene myosin-11 Neighboring gene immunoglobulin like and fibronectin type III domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plakophilin-1
Names
Plakophilin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051261.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    16002569..16053592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037885052.2 → XP_037740980.1  plakophilin-1

    UniProtKB/TrEMBL
    M7CJ21
    Related
    ENSCMYP00015005556.1, ENSCMYT00015006737.1
    Conserved Domains (3) summary
    smart00185
    Location:276 → 316
    ARM; Armadillo/beta-catenin-like repeats
    cd13394
    Location:247 → 477
    Syo1_like; Fungal symportin 1 (syo1) and similar proteins
    sd00043
    Location:247 → 272
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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