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FMN1 formin 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102942267, updated on 10-Mar-2024

Summary

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Gene symbol
FMN1
Gene description
formin 1
Locus tag
UY3_16163
See related
EnsemblRapid:ENSCMYG00015018049
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Also known as
Formin; Formin-1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
24
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 6 NC_051246.2 (76565941..76996135)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 5 NC_051245.1 (76632304..76987480)

Chromosome 6 - NC_051246.2Genomic Context describing neighboring genes Neighboring gene ryanodine receptor 3 Neighboring gene uncharacterized LOC122466126 Neighboring gene neuroendocrine protein 7B2 Neighboring gene gremlin 1, DAN family BMP antagonist

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
formin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051246.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    76565941..76996135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043548088.1 → XP_043404023.1  formin-1 isoform X1

    Conserved Domains (1) summary
    pfam02181
    Location:1023 → 1414
    FH2; Formin Homology 2 Domain

  2. XM_043548089.1 → XP_043404024.1  formin-1 isoform X2

    Related
    ENSCMYP00015028220.1, ENSCMYT00015034397.1
    Conserved Domains (1) summary
    smart00498
    Location:1013 → 1409
    FH2; Formin Homology 2 Domain

  3. XM_007069366.4 → XP_007069428.2  formin-1 isoform X1

    Conserved Domains (1) summary
    pfam02181
    Location:1023 → 1414
    FH2; Formin Homology 2 Domain

  4. XM_043548092.1 → XP_043404027.1  formin-1 isoform X5

    Related
    ENSCMYP00015028061.1, ENSCMYT00015034238.1
    Conserved Domains (2) summary
    smart00498
    Location:778 → 1174
    FH2; Formin Homology 2 Domain
    pfam07964
    Location:314 → 653
    Red1; Rec10 / Red1

  5. XM_043548090.1 → XP_043404025.1  formin-1 isoform X3

    Conserved Domains (2) summary
    smart00498
    Location:789 → 1185
    FH2; Formin Homology 2 Domain
    pfam07964
    Location:314 → 664
    Red1; Rec10 / Red1

  6. XM_043548091.1 → XP_043404026.1  formin-1 isoform X4

    Conserved Domains (2) summary
    smart00498
    Location:778 → 1174
    FH2; Formin Homology 2 Domain
    pfam07964
    Location:314 → 653
    Red1; Rec10 / Red1
Nucleotide Protein
Heading Accession and Version

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