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IFT140 intraflagellar transport 140 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102941692, updated on 10-Mar-2024

Summary

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Gene symbol
IFT140
Gene description
intraflagellar transport 140
Locus tag
UY3_02060
See related
EnsemblRapid:ENSCMYG00015014991
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
32
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 10 NC_051250.2 (37391600..37640508, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 10 NC_051250.1 (46416315..46662078)

Chromosome 10 - NC_051250.2Genomic Context describing neighboring genes Neighboring gene RNA binding protein with serine rich domain 1 Neighboring gene telomere maintenance 2 Neighboring gene transmembrane protein 204 Neighboring gene uncharacterized LOC119567195 Neighboring gene cramped chromatin regulator homolog 1 Neighboring gene Jupiter microtubule associated homolog 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intraciliary retrograde transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle A IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 140 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051250.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    37391600..37640508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043523716.1 → XP_043379651.1  intraflagellar transport protein 140 homolog isoform X1

    Conserved Domains (4) summary
    COG0457
    Location:832 → 1041
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG2319
    Location:51 → 435
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:958 → 984
    TPR; TPR repeat [structural motif]
    sd00039
    Location:18 → 55
    7WD40; WD40 repeat [structural motif]

  2. XM_043523717.1 → XP_043379652.1  intraflagellar transport protein 140 homolog isoform X3

    Conserved Domains (4) summary
    COG0457
    Location:749 → 958
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG2319
    Location:51 → 435
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:875 → 901
    TPR; TPR repeat [structural motif]
    sd00039
    Location:18 → 55
    7WD40; WD40 repeat [structural motif]

  3. XM_043523714.1 → XP_043379649.1  intraflagellar transport protein 140 homolog isoform X1

    Conserved Domains (4) summary
    COG0457
    Location:832 → 1041
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG2319
    Location:51 → 435
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:958 → 984
    TPR; TPR repeat [structural motif]
    sd00039
    Location:18 → 55
    7WD40; WD40 repeat [structural motif]

  4. XM_043523715.1 → XP_043379650.1  intraflagellar transport protein 140 homolog isoform X1

    Conserved Domains (4) summary
    COG0457
    Location:832 → 1041
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG2319
    Location:51 → 435
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:958 → 984
    TPR; TPR repeat [structural motif]
    sd00039
    Location:18 → 55
    7WD40; WD40 repeat [structural motif]

  5. XM_027834811.3 → XP_027690612.2  intraflagellar transport protein 140 homolog isoform X2

    Related
    ENSCMYP00015023050.1, ENSCMYT00015028164.1
    Conserved Domains (4) summary
    COG0457
    Location:829 → 1038
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG2319
    Location:51 → 432
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:955 → 981
    TPR; TPR repeat [structural motif]
    sd00039
    Location:18 → 55
    7WD40; WD40 repeat [structural motif]

  6. XM_037911037.2 → XP_037766965.1  intraflagellar transport protein 140 homolog isoform X2

    Conserved Domains (4) summary
    COG0457
    Location:829 → 1038
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG2319
    Location:51 → 432
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:955 → 981
    TPR; TPR repeat [structural motif]
    sd00039
    Location:18 → 55
    7WD40; WD40 repeat [structural motif]

  7. XM_043523718.1 → XP_043379653.1  intraflagellar transport protein 140 homolog isoform X4

    Conserved Domains (4) summary
    COG0457
    Location:746 → 955
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG2319
    Location:51 → 432
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:872 → 898
    TPR; TPR repeat [structural motif]
    sd00039
    Location:18 → 55
    7WD40; WD40 repeat [structural motif]

  8. XM_043523719.1 → XP_043379654.1  intraflagellar transport protein 140 homolog isoform X5

    Conserved Domains (4) summary
    COG0457
    Location:682 → 891
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG2319
    Location:32 → 285
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:808 → 834
    TPR; TPR repeat [structural motif]
    sd00039
    Location:19 → 59
    7WD40; WD40 repeat [structural motif]

  9. XM_043523720.1 → XP_043379655.1  intraflagellar transport protein 140 homolog isoform X5

    Conserved Domains (4) summary
    COG0457
    Location:682 → 891
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG2319
    Location:32 → 285
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:808 → 834
    TPR; TPR repeat [structural motif]
    sd00039
    Location:19 → 59
    7WD40; WD40 repeat [structural motif]

  10. XM_043523721.1 → XP_043379656.1  intraflagellar transport protein 140 homolog isoform X6

    Conserved Domains (2) summary
    COG2319
    Location:18 → 281
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:804 → 830
    TPR; TPR repeat [structural motif]

  11. XM_043523722.1 → XP_043379657.1  intraflagellar transport protein 140 homolog isoform X7

    Conserved Domains (2) summary
    COG2319
    Location:9 → 163
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:686 → 712
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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