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Popdc1 popeye domain cAMP effector 1 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102922079, updated on 21-Sep-2024

Summary

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Gene symbol
Popdc1
Gene description
popeye domain cAMP effector 1
See related
Ensembl:ENSPEMG00000014540
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Also known as
Bves
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
9
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 16 NC_056023.1 (5628253..5662307, complement)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501244.1 (333896..369323)

Chromosome 16 - NC_056023.1Genomic Context describing neighboring genes Neighboring gene HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 Neighboring gene lin-28 homolog B Neighboring gene uncharacterized LOC121823077 Neighboring gene uncharacterized LOC121823078 Neighboring gene popeye domain cAMP effector 3 Neighboring gene prolyl endopeptidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cAMP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
blood vessel epicardial substance

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056023.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    5628253..5662307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006983736.3 → XP_006983798.1  blood vessel epicardial substance

    See identical proteins and their annotated locations for XP_006983798.1

    UniProtKB/TrEMBL
    A0A6J0DS80
    Conserved Domains (1) summary
    pfam04831
    Location:40 → 266
    Popeye; Popeye protein conserved region

  2. XM_006983734.3 → XP_006983796.1  blood vessel epicardial substance

    See identical proteins and their annotated locations for XP_006983796.1

    UniProtKB/TrEMBL
    A0A6J0DS80
    Conserved Domains (1) summary
    pfam04831
    Location:40 → 266
    Popeye; Popeye protein conserved region
Nucleotide Protein
Heading Accession and Version

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