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Slx4 SLX4 structure-specific endonuclease subunit [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102908990, updated on 10-Mar-2024

Summary

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Gene symbol
Slx4
Gene description
SLX4 structure-specific endonuclease subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 8 NC_056015.1 (10984833..11012027)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501272.1 (5351127..5380821)

Chromosome 8 - NC_056015.1Genomic Context describing neighboring genes Neighboring gene TNF receptor associated protein 1 Neighboring gene deoxyribonuclease 1 Neighboring gene NLR family CARD domain containing 3 Neighboring gene clusterin associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic DNA double-strand break processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in resolution of meiotic recombination intermediates IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Slx1-Slx4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
structure-specific endonuclease subunit SLX4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056015.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    10984833..11012027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042283315.1 → XP_042139249.1  structure-specific endonuclease subunit SLX4

    UniProtKB/TrEMBL
    A0A6J0E0C6
    Conserved Domains (3) summary
    PTZ00449
    Location:842 → 1182
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PLN03237
    Location:25 → 128
    PLN03237; DNA topoisomerase 2; Provisional
    cl38908
    Location:639 → 753
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
Nucleotide Protein
Heading Accession and Version

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