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Ift122 intraflagellar transport 122 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102907932, updated on 10-Mar-2024

Summary

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Gene symbol
Ift122
Gene description
intraflagellar transport 122
See related
Ensembl:ENSPEMG00000017389
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
30
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 3 NC_056010.1 (129718280..129801396)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501140.1 (1351272..1429584)

Chromosome 3 - NC_056010.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA7 Neighboring gene ribosomal protein L32 Neighboring gene EF-hand calcium binding domain 12 Neighboring gene uncharacterized LOC121828089 Neighboring gene methyl-CpG binding domain 4, DNA glycosylase Neighboring gene uncharacterized LOC121828088 Neighboring gene intraflagellar transport protein 122 homolog Neighboring gene histone H1.8 Neighboring gene rhodopsin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intraciliary retrograde transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of intraciliary transport particle A IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in non-motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 122 homolog
Names
intraflagellar transport 122 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056010.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    129718280..129801396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042273880.1 → XP_042129814.1  intraflagellar transport protein 122 homolog isoform X1

    UniProtKB/TrEMBL
    A0A6J0DD55
    Conserved Domains (3) summary
    TIGR02917
    Location:710 → 953
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00039
    Location:15 → 51
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:15 → 190
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_042273881.1 → XP_042129815.1  intraflagellar transport protein 122 homolog isoform X2

    UniProtKB/TrEMBL
    A0A6J0DD55, A0A8C8TUW5
    Conserved Domains (3) summary
    TIGR02917
    Location:710 → 900
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00039
    Location:15 → 51
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:15 → 190
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_042273882.1 → XP_042129816.1  intraflagellar transport protein 122 homolog isoform X3

    UniProtKB/TrEMBL
    A0A6J0DD55, A0A8C8TYS2
    Conserved Domains (3) summary
    TIGR02917
    Location:651 → 894
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00039
    Location:15 → 51
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:49 → 291
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_042273884.1 → XP_042129818.1  intraflagellar transport protein 122 homolog isoform X4

    UniProtKB/TrEMBL
    A0A6J0DD55
    Conserved Domains (3) summary
    TIGR02917
    Location:651 → 841
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00039
    Location:15 → 51
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:49 → 291
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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