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Ddx56 DEAD-box helicase 56 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102902855, updated on 10-Mar-2024

Summary

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Gene symbol
Ddx56
Gene description
DEAD-box helicase 56
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 10 NC_056017.1 (23786367..23793554)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501063.1 (4764458..4771679, complement)

Chromosome 10 - NC_056017.1Genomic Context describing neighboring genes Neighboring gene oxoglutarate dehydrogenase Neighboring gene protein SGT1 homolog Neighboring gene transmembrane p24 trafficking protein 4 Neighboring gene uncharacterized LOC121832707 Neighboring gene uncharacterized LOC121832705 Neighboring gene NPC1 like intracellular cholesterol transporter 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX56
Names
DEAD (Asp-Glu-Ala-Asp) box helicase 56

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056017.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    23786367..23793554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006972999.3 → XP_006973061.1  probable ATP-dependent RNA helicase DDX56

    UniProtKB/TrEMBL
    A0A6I9KXX4
    Conserved Domains (3) summary
    COG0513
    Location:9 → 521
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    pfam00271
    Location:257 → 380
    Helicase_C; Helicase conserved C-terminal domain
    cl21455
    Location:9 → 219
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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