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Astn2 astrotactin 2 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102902804, updated on 10-Mar-2024

Summary

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Gene symbol
Astn2
Gene description
astrotactin 2
See related
Ensembl:ENSPEMG00000013068
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Astn2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
24
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 2 NC_056009.1 (84505062..85454745, complement)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501157.1 (3216640..4167271, complement)

Chromosome 2 - NC_056009.1Genomic Context describing neighboring genes Neighboring gene serine palmitoyltransferase 1-like Neighboring gene pappalysin 1 Neighboring gene uncharacterized LOC121827266 Neighboring gene tripartite motif containing 32 Neighboring gene L-lactate dehydrogenase A chain-like Neighboring gene uncharacterized LOC121827267 Neighboring gene toll like receptor 4 Neighboring gene uncharacterized LOC121827595

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron migration IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
astrotactin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056009.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    84505062..85454745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042271292.1 → XP_042127226.1  astrotactin-2 isoform X1

    UniProtKB/TrEMBL
    A0A6I9L9C3
    Conserved Domains (2) summary
    smart00457
    Location:703 → 886
    MACPF; membrane-attack complex / perforin
    cd00063
    Location:917 → 1039
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  2. XM_042271293.1 → XP_042127227.1  astrotactin-2 isoform X2

    Conserved Domains (2) summary
    cd00063
    Location:161 → 283
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl02616
    Location:36 → 130
    MACPF; MAC/Perforin domain
Nucleotide Protein
Heading Accession and Version

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