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UPF1 UPF1 RNA helicase and ATPase [ Pteropus alecto (black flying fox) ]

Gene ID: 102884453, updated on 30-Mar-2024

Summary

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Gene symbol
UPF1
Gene description
UPF1 RNA helicase and ATPase
Locus tag
PAL_GLEAN10006704
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006429864.1 (1792597..1832499)

NW_006429864.1Genomic Context describing neighboring genes Neighboring gene CREB regulated transcription coactivator 1 Neighboring gene cartilage oligomeric matrix protein Neighboring gene uncharacterized LOC112476596 Neighboring gene transfer RNA valine (anticodon GAC) Neighboring gene 5S ribosomal RNA Neighboring gene growth differentiation factor 1 Neighboring gene ceramide synthase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006429864 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of nonsense transcripts 1
Names
Regulator of nonsense transcripts 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006429864.1 Reference ASM32557v1 Primary Assembly

    Range
    1792597..1832499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006904409.3 → XP_006904471.1  regulator of nonsense transcripts 1

    UniProtKB/TrEMBL
    L5L818
    Conserved Domains (4) summary
    COG1112
    Location:141 → 905
    DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
    pfam09416
    Location:117 → 268
    UPF1_Zn_bind; RNA helicase (UPF2 interacting domain)
    pfam13087
    Location:676 → 873
    AAA_12; AAA domain
    pfam13245
    Location:473 → 530
    AAA_19; Part of AAA domain
Nucleotide Protein
Heading Accession and Version

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