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SETD2 SET domain containing 2, histone lysine methyltransferase [ Elephantulus edwardii (Cape elephant shrew) ]

Gene ID: 102870293, updated on 10-Mar-2024

Summary

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Gene symbol
SETD2
Gene description
SET domain containing 2, histone lysine methyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Elephantulus edwardii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Macroscelidea; Macroscelididae; Elephantulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current EleEdw1.0 (GCF_000299155.1) Unplaced Scaffold NW_006399871.1 (3602824..3697262)

NW_006399871.1Genomic Context describing neighboring genes Neighboring gene kelch like family member 18 Neighboring gene kinesin family member 9 Neighboring gene actin-related protein 2/3 complex subunit 1A-like Neighboring gene death domain-containing membrane protein NRADD-like Neighboring gene neurobeachin like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006399871 unplaced scaffold reference EleEdw1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase SETD2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Elephantulus edwardii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EleEdw1.0

Genomic

  1. NW_006399871.1 Reference EleEdw1.0

    Range
    3602824..3697262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006893034.1 → XP_006893096.1  histone-lysine N-methyltransferase SETD2

    Conserved Domains (5) summary
    smart00570
    Location:1444 → 1498
    AWS; associated with SET domains
    smart00317
    Location:1499 → 1622
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    smart00508
    Location:1623 → 1639
    PostSET; Cysteine-rich motif following a subset of SET domains
    pfam00397
    Location:2201 → 2230
    WW; WW domain
    pfam08236
    Location:2279 → 2358
    SRI; SRI (Set2 Rpb1 interacting) domain
Nucleotide Protein
Heading Accession and Version

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