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TDP1 tyrosyl-DNA phosphodiesterase 1 [ Elephantulus edwardii (Cape elephant shrew) ]

Gene ID: 102844789, updated on 10-Mar-2024

Summary

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Gene symbol
TDP1
Gene description
tyrosyl-DNA phosphodiesterase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Elephantulus edwardii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Macroscelidea; Macroscelididae; Elephantulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current EleEdw1.0 (GCF_000299155.1) Unplaced Scaffold NW_006399752.1 (45533598..45631057, complement)

NW_006399752.1Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, ATPase 1 Neighboring gene potassium two pore domain channel subfamily K member 13 Neighboring gene EF-hand calcium binding domain 11 Neighboring gene forkhead box N3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006399752 unplaced scaffold reference EleEdw1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-tyrosyl-DNA phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in single strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosyl-DNA phosphodiesterase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Elephantulus edwardii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EleEdw1.0

Genomic

  1. NW_006399752.1 Reference EleEdw1.0

    Range
    45533598..45631057 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006879126.1 → XP_006879188.1  tyrosyl-DNA phosphodiesterase 1

    Conserved Domains (3) summary
    cd09193
    Location:161 → 329
    PLDc_mTdp1_1; Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase
    cd09195
    Location:351 → 544
    PLDc_mTdp1_2; Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase
    pfam06087
    Location:164 → 581
    Tyr-DNA_phospho; Tyrosyl-DNA phosphodiesterase
Nucleotide Protein
Heading Accession and Version

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