U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL11A2 collagen type XI alpha 2 chain [ Chrysochloris asiatica (Cape golden mole) ]

Gene ID: 102832338, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
COL11A2
Gene description
collagen type XI alpha 2 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysochloris asiatica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Chrysochloridae; Chrysochlorinae; Chrysochloris
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
66
Annotation release Status Assembly Chr Location
100 current ChrAsi1.0 (GCF_000296735.1) Unplaced Scaffold NW_006408556.1 (1304889..1334465, complement)

NW_006408556.1Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DP alpha 1 chain-like Neighboring gene uncharacterized LOC102822934 Neighboring gene tetranectin-like Neighboring gene retinoid X receptor beta Neighboring gene solute carrier family 39 member 7

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006408556 unplaced scaffold reference ChrAsi1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-2(XI) chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Chrysochloris asiatica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChrAsi1.0 Primary Assembly

Genomic

  1. NW_006408556.1 Reference ChrAsi1.0 Primary Assembly

    Range
    1304889..1334465 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006860344.1 → XP_006860406.1  collagen alpha-2(XI) chain

    UniProtKB/TrEMBL
    A0A9B0T7G1
    Conserved Domains (3) summary
    pfam01391
    Location:547 → 603
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1433 → 1628
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:32 → 213
    TSPN; Thrombospondin N-terminal -like domains

  2. XM_006860343.1 → XP_006860405.1  collagen alpha-2(XI) chain

    UniProtKB/TrEMBL
    A0A9B0TF49
    Conserved Domains (4) summary
    pfam01391
    Location:568 → 624
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1454 → 1649
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:32 → 213
    TSPN; Thrombospondin N-terminal -like domains
    pfam15771
    Location:222 → 285
    DUF4700; Domain of unknown function (DUF4700)

  3. XM_006860342.1 → XP_006860404.1  collagen alpha-2(XI) chain

    UniProtKB/TrEMBL
    A0A9B0THA0
    Conserved Domains (3) summary
    pfam01391
    Location:654 → 710
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:1540 → 1735
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:32 → 213
    TSPN; Thrombospondin N-terminal -like domains
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.