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ATXN1 ataxin 1 [ Chrysochloris asiatica (Cape golden mole) ]

Gene ID: 102828633, updated on 22-Oct-2023

Summary

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Gene symbol
ATXN1
Gene description
ataxin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysochloris asiatica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Chrysochloridae; Chrysochlorinae; Chrysochloris
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ChrAsi1.0 (GCF_000296735.1) Unplaced Scaffold NW_006408558.1 (11090666..11109216)

NW_006408558.1Genomic Context describing neighboring genes Neighboring gene ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene Neighboring gene spermidine synthase-like Neighboring gene nephrocystin-1-like Neighboring gene guanosine monophosphate reductase Neighboring gene mucin 5B, oligomeric mucus/gel-forming

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006408558 unplaced scaffold reference ChrAsi1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysochloris asiatica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChrAsi1.0 Primary Assembly

Genomic

  1. NW_006408558.1 Reference ChrAsi1.0 Primary Assembly

    Range
    11090666..11109216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006861018.1 → XP_006861080.1  ataxin-1-like

    UniProtKB/TrEMBL
    A0A9B0TGF2
    Conserved Domains (2) summary
    smart00536
    Location:566 → 681
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:390 → 438
    ATXN-1_C; Capicua transcriptional repressor modulator
Nucleotide Protein
Heading Accession and Version

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