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PPFIA2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 [ Chrysochloris asiatica (Cape golden mole) ]

Gene ID: 102820187, updated on 22-Oct-2023

Summary

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Gene symbol
PPFIA2
Gene description
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysochloris asiatica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Chrysochloridae; Chrysochlorinae; Chrysochloris
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Genomic context

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Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
100 current ChrAsi1.0 (GCF_000296735.1) Unplaced Scaffold NW_006408693.1 (3902958..4652184)

NW_006408693.1Genomic Context describing neighboring genes Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 5 pseudogene Neighboring gene leucine carboxyl methyltransferase 1-like Neighboring gene intraflagellar transport protein 20 homolog Neighboring gene ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d pseudogene Neighboring gene acyl-CoA synthetase short-chain family member 3 Neighboring gene zinc finger protein 397-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006408693 unplaced scaffold reference ChrAsi1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
liprin-alpha-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysochloris asiatica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChrAsi1.0 Primary Assembly

Genomic

  1. NW_006408693.1 Reference ChrAsi1.0 Primary Assembly

    Range
    3902958..4652184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006871823.1 → XP_006871885.1  liprin-alpha-2-like

    UniProtKB/TrEMBL
    A0A9B0U3F3
    Conserved Domains (6) summary
    cd09562
    Location:895 → 965
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:1019 → 1084
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1104 → 1175
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    smart00454
    Location:895 → 961
    SAM; Sterile alpha motif
    pfam09728
    Location:265 → 533
    Taxilin; Myosin-like coiled-coil protein
    cl02488
    Location:362 → 536
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  2. XM_006871825.1 → XP_006871887.1  liprin-alpha-2-like

    UniProtKB/TrEMBL
    A0A9B0TWZ1
    Conserved Domains (6) summary
    cd09562
    Location:895 → 965
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:1019 → 1084
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1104 → 1175
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    smart00454
    Location:895 → 961
    SAM; Sterile alpha motif
    pfam09728
    Location:265 → 533
    Taxilin; Myosin-like coiled-coil protein
    cl02488
    Location:362 → 536
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  3. XM_006871827.1 → XP_006871889.1  liprin-alpha-2-like

    UniProtKB/TrEMBL
    A0A9B0WVR7
    Conserved Domains (6) summary
    cd09562
    Location:880 → 950
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:1004 → 1069
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1089 → 1160
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    smart00454
    Location:880 → 946
    SAM; Sterile alpha motif
    pfam09728
    Location:247 → 515
    Taxilin; Myosin-like coiled-coil protein
    cl02488
    Location:344 → 518
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  4. XM_006871824.1 → XP_006871886.1  liprin-alpha-2-like

    UniProtKB/TrEMBL
    A0A9B0TXH1
    Conserved Domains (6) summary
    cd09562
    Location:895 → 965
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:1013 → 1078
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1098 → 1169
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    smart00454
    Location:895 → 961
    SAM; Sterile alpha motif
    pfam09728
    Location:265 → 533
    Taxilin; Myosin-like coiled-coil protein
    cl02488
    Location:362 → 536
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  5. XM_006871826.1 → XP_006871888.1  liprin-alpha-2-like

    UniProtKB/TrEMBL
    A0A9B0U035
    Conserved Domains (6) summary
    cd09562
    Location:895 → 965
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:998 → 1063
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1083 → 1154
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    smart00454
    Location:895 → 961
    SAM; Sterile alpha motif
    pfam09728
    Location:265 → 533
    Taxilin; Myosin-like coiled-coil protein
    cl02488
    Location:362 → 536
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  6. XM_006871829.1 → XP_006871891.1  liprin-alpha-2-like

    UniProtKB/TrEMBL
    A0A9B0WXT0
    Conserved Domains (6) summary
    cd09562
    Location:821 → 891
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:918 → 983
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1003 → 1074
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    smart00454
    Location:821 → 887
    SAM; Sterile alpha motif
    pfam09728
    Location:191 → 459
    Taxilin; Myosin-like coiled-coil protein
    cl02488
    Location:288 → 462
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  7. XM_006871830.1 → XP_006871892.1  liprin-alpha-2-like

    UniProtKB/TrEMBL
    A0A9B0WYG4
    Conserved Domains (6) summary
    cd09562
    Location:796 → 866
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:914 → 979
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:999 → 1070
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    smart00454
    Location:796 → 862
    SAM; Sterile alpha motif
    pfam09728
    Location:166 → 434
    Taxilin; Myosin-like coiled-coil protein
    cl02488
    Location:263 → 437
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  8. XM_006871828.1 → XP_006871890.1  liprin-alpha-2-like

    UniProtKB/TrEMBL
    A0A9B0WYM0
    Conserved Domains (6) summary
    cd09562
    Location:824 → 894
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:948 → 1013
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:1033 → 1104
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    smart00454
    Location:824 → 890
    SAM; Sterile alpha motif
    pfam09728
    Location:191 → 459
    Taxilin; Myosin-like coiled-coil protein
    cl02488
    Location:288 → 462
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  9. XM_006871831.1 → XP_006871893.1  liprin-alpha-2-like

    UniProtKB/TrEMBL
    A0A9B0WX21
    Conserved Domains (4) summary
    cd09562
    Location:112 → 182
    SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
    cd09565
    Location:205 → 270
    SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
    cd09568
    Location:290 → 361
    SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
    smart00454
    Location:112 → 178
    SAM; Sterile alpha motif
Nucleotide Protein
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