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PRDM4 PR/SET domain 4 [ Chrysochloris asiatica (Cape golden mole) ]

Gene ID: 102816235, updated on 10-Mar-2024

Summary

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Gene symbol
PRDM4
Gene description
PR/SET domain 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysochloris asiatica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Chrysochloridae; Chrysochlorinae; Chrysochloris
Orthologs
human mouse all
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Genomic context

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See PRDM4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ChrAsi1.0 (GCF_000296735.1) Unplaced Scaffold NW_006408594.1 (11559642..11598356)

NW_006408594.1Genomic Context describing neighboring genes Neighboring gene BCL2-associated athanogene 4 pseudogene Neighboring gene RNA 2',3'-cyclic phosphate and 5'-OH ligase Neighboring gene achaete-scute family bHLH transcription factor 4 Neighboring gene PWP1 homolog, endonuclein Neighboring gene ankyrin repeat and BTB domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006408594 unplaced scaffold reference ChrAsi1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone methyltransferase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysochloris asiatica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChrAsi1.0 Primary Assembly

Genomic

  1. NW_006408594.1 Reference ChrAsi1.0 Primary Assembly

    Range
    11559642..11598356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006865243.1 → XP_006865305.1  PR domain zinc finger protein 4

    UniProtKB/TrEMBL
    A0A9B0WSG5
    Conserved Domains (3) summary
    sd00017
    Location:621 → 641
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:619 → 641
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:633 → 658
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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