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SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 [ Chrysochloris asiatica (Cape golden mole) ]

Gene ID: 102814576, updated on 10-Mar-2024

Summary

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Gene symbol
SNRNP40
Gene description
small nuclear ribonucleoprotein U5 subunit 40
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysochloris asiatica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Chrysochloridae; Chrysochlorinae; Chrysochloris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ChrAsi1.0 (GCF_000296735.1) Unplaced Scaffold NW_006408565.1 (4105771..4143928)

NW_006408565.1Genomic Context describing neighboring genes Neighboring gene fatty acid binding protein 3 Neighboring gene zinc finger CCHC-type containing 17 Neighboring gene eukaryotic translation initiation factor 3, subunit L pseudogene Neighboring gene neugrin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006408565 unplaced scaffold reference ChrAsi1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U5 small nuclear ribonucleoprotein 40 kDa protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysochloris asiatica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChrAsi1.0 Primary Assembly

Genomic

  1. NW_006408565.1 Reference ChrAsi1.0 Primary Assembly

    Range
    4105771..4143928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006862186.1 → XP_006862248.1  U5 small nuclear ribonucleoprotein 40 kDa protein

    UniProtKB/TrEMBL
    A0A9B0WMN4
    Conserved Domains (3) summary
    COG2319
    Location:58 → 349
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:60 → 349
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:68 → 105
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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