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SLX4 SLX4 structure-specific endonuclease subunit [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102749206, updated on 10-Mar-2024

Summary

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Gene symbol
SLX4
Gene description
SLX4 structure-specific endonuclease subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Orthologs
human mouse all
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Genomic context

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See SLX4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006385402.1 (324653..346124)

NW_006385402.1Genomic Context describing neighboring genes Neighboring gene guanylyl cyclase-activating protein 1 pseudogene Neighboring gene TNF receptor associated protein 1 Neighboring gene deoxyribonuclease 1 Neighboring gene ubiquitin-conjugating enzyme E2 L3 pseudogene Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial pseudogene Neighboring gene NLR family CARD domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006385402 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic DNA double-strand break processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in resolution of meiotic recombination intermediates IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Slx1-Slx4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
structure-specific endonuclease subunit SLX4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006385402.1 Reference LepWed1.0 Primary Assembly

    Range
    324653..346124
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031017618.1 → XP_030873478.1  structure-specific endonuclease subunit SLX4 isoform X1

    UniProtKB/TrEMBL
    A0A7F8PXI4

  2. XM_031017623.1 → XP_030873483.1  structure-specific endonuclease subunit SLX4 isoform X2

    UniProtKB/TrEMBL
    A0A7F8PZ91
    Conserved Domains (3) summary
    PHA03307
    Location:1153 → 1417
    PHA03307; transcriptional regulator ICP4; Provisional
    cd18288
    Location:607 → 721
    BTB_POZ_BTBD12_SLX4; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Structure-specific endonuclease subunit SLX4
    pfam09494
    Location:1660 → 1717
    Slx4; Slx4 endonuclease

  3. XM_031017624.1 → XP_030873484.1  structure-specific endonuclease subunit SLX4 isoform X3

    UniProtKB/TrEMBL
    A0A7F8PXI8

  4. XM_031017625.1 → XP_030873485.1  structure-specific endonuclease subunit SLX4 isoform X4

    UniProtKB/TrEMBL
    A0A7F8PWR1
    Conserved Domains (2) summary
    PHA03307
    Location:1153 → 1417
    PHA03307; transcriptional regulator ICP4; Provisional
    cd18288
    Location:607 → 721
    BTB_POZ_BTBD12_SLX4; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Structure-specific endonuclease subunit SLX4

  5. XM_031017622.1 → XP_030873482.1  structure-specific endonuclease subunit SLX4 isoform X1

    UniProtKB/TrEMBL
    A0A7F8PXI4
    Conserved Domains (3) summary
    PHA03307
    Location:1153 → 1417
    PHA03307; transcriptional regulator ICP4; Provisional
    cd18288
    Location:607 → 721
    BTB_POZ_BTBD12_SLX4; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Structure-specific endonuclease subunit SLX4
    pfam09494
    Location:1661 → 1718
    Slx4; Slx4 endonuclease

  6. XM_031017619.1 → XP_030873479.1  structure-specific endonuclease subunit SLX4 isoform X1

    UniProtKB/TrEMBL
    A0A7F8PXI4

  7. XM_031017620.1 → XP_030873480.1  structure-specific endonuclease subunit SLX4 isoform X1

    UniProtKB/TrEMBL
    A0A7F8PXI4

  8. XM_031017621.1 → XP_030873481.1  structure-specific endonuclease subunit SLX4 isoform X1

    UniProtKB/TrEMBL
    A0A7F8PXI4
    Conserved Domains (3) summary
    PHA03307
    Location:1153 → 1417
    PHA03307; transcriptional regulator ICP4; Provisional
    cd18288
    Location:607 → 721
    BTB_POZ_BTBD12_SLX4; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Structure-specific endonuclease subunit SLX4
    pfam09494
    Location:1661 → 1718
    Slx4; Slx4 endonuclease

RNA

  1. XR_004072203.1 RNA Sequence

  2. XR_004072204.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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