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VPS50 VPS50 subunit of EARP/GARPII complex [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102746564, updated on 10-Mar-2024

Summary

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Gene symbol
VPS50
Gene description
VPS50 subunit of EARP/GARPII complex
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006383440.1 (1031416..1164643, complement)

NW_006383440.1Genomic Context describing neighboring genes Neighboring gene tubulin polyglutamylase complex subunit 2 pseudogene Neighboring gene calcitonin receptor Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene Neighboring gene HEPACAM family member 2 Neighboring gene sterile alpha motif domain-containing protein 9 Neighboring gene sterile alpha motif domain containing 9 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006383440 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytic recycling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of EARP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndetin
Names
VPS50, EARP/GARPII complex subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006383440.1 Reference LepWed1.0 Primary Assembly

    Range
    1031416..1164643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031027737.1 → XP_030883597.1  syndetin

    UniProtKB/TrEMBL
    A0A7F8QQW8
    Conserved Domains (2) summary
    pfam10474
    Location:725 → 979
    DUF2451; Protein of unknown function C-terminus (DUF2451)
    pfam10475
    Location:54 → 345
    Vps54_N; Vacuolar-sorting protein 54, of GARP complex
Nucleotide Protein
Heading Accession and Version

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