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COL6A1 collagen type VI alpha 1 chain [ Leptonychotes weddellii (Weddell seal) ]

Gene ID: 102746124, updated on 10-Mar-2024

Summary

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Gene symbol
COL6A1
Gene description
collagen type VI alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptonychotes weddellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006385145.1 (289081..311256, complement)

NW_006385145.1Genomic Context describing neighboring genes Neighboring gene formimidoyltransferase cyclodeaminase Neighboring gene collagen type VI alpha 2 chain Neighboring gene poly(rC)-binding protein 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006385145 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(VI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepWed1.0 Primary Assembly

Genomic

  1. NW_006385145.1 Reference LepWed1.0 Primary Assembly

    Range
    289081..311256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006745840.2 → XP_006745903.1  collagen alpha-1(VI) chain

    UniProtKB/TrEMBL
    A0A2U3YQN6
    Conserved Domains (2) summary
    pfam01391
    Location:356 → 415
    Collagen; Collagen triple helix repeat (20 copies)
    cd01480
    Location:34 → 226
    vWA_collagen_alpha_1-VI-type; VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...
Nucleotide Protein
Heading Accession and Version

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