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adamtsl4 ADAMTS like 4 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102699058, updated on 2-Nov-2023

Summary

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Gene symbol
adamtsl4
Gene description
ADAMTS like 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See adamtsl4 in Genome Data Viewer
Location:
chromosome: LG24
Exon count:
12
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG24 NC_023202.1 (4818006..4835933)

Linkage Group LG24 - NC_023202.1Genomic Context describing neighboring genes Neighboring gene PRP3 pre-mRNA processing factor 3 homolog (yeast) Neighboring gene regulation of nuclear pre-mRNA domain containing 2 Neighboring gene ceramide synthase 2-like Neighboring gene cugbp, Elav-like family member 3a Neighboring gene histone-lysine N-methyltransferase SETDB1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023202.1 Chromosome LG24 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADAMTS-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023202.1 Reference LepOcu1 Primary Assembly

    Range
    4818006..4835933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015368805.1 → XP_015224291.1  ADAMTS-like protein 4

    Conserved Domains (2) summary
    smart00209
    Location:51 → 78
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:322 → 396
    ADAM_spacer1; ADAM-TS Spacer 1
Nucleotide Protein
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