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slitrk6 SLIT and NTRK-like family, member 6 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102697383, updated on 10-Mar-2024

Summary

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Gene symbol
slitrk6
Gene description
SLIT and NTRK-like family, member 6
See related
Ensembl:ENSLOCG00000017777
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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See slitrk6 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
3
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG17 NC_023195.1 (6404701..6418942)

Linkage Group LG17 - NC_023195.1Genomic Context describing neighboring genes Neighboring gene CD200 receptor 1 Neighboring gene cilia and flagella associated protein 91 Neighboring gene SLIT and NTRK like family member 1 Neighboring gene uncharacterized LOC107079432

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023195.1 Chromosome LG17 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLIT and NTRK-like protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023195.1 Reference LepOcu1 Primary Assembly

    Range
    6404701..6418942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015363621.1 → XP_015219107.1  SLIT and NTRK-like protein 6

    UniProtKB/TrEMBL
    W5NMM2
    Conserved Domains (4) summary
    sd00033
    Location:68 → 89
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:373 → 413
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:373 → 432
    LRR_8; Leucine rich repeat
    cl15307
    Location:502 → 552
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  2. XM_015363622.1 → XP_015219108.1  SLIT and NTRK-like protein 6

    UniProtKB/TrEMBL
    W5NMM2
    Related
    ENSLOCP00000021881.1, ENSLOCT00000021919.1
    Conserved Domains (4) summary
    sd00033
    Location:68 → 89
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:373 → 413
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:373 → 432
    LRR_8; Leucine rich repeat
    cl15307
    Location:502 → 552
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
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