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csf1ra colony stimulating factor 1 receptor, a [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102696844, updated on 11-Apr-2024

Summary

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Gene symbol
csf1ra
Gene description
colony stimulating factor 1 receptor, a
See related
Ensembl:ENSLOCG00000011078
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
csf1r
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG6
Exon count:
22
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG6 NC_023184.1 (30878843..30903394, complement)

Linkage Group LG6 - NC_023184.1Genomic Context describing neighboring genes Neighboring gene vascular endothelial growth factor C-like Neighboring gene uncharacterized LOC107077677 Neighboring gene platelet-derived growth factor receptor, beta polypeptide Neighboring gene caudal type homeobox 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023184.1 Chromosome LG6 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables macrophage colony-stimulating factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in osteoclast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CSF1-CSF1R complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
macrophage colony-stimulating factor 1 receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023184.1 Reference LepOcu1 Primary Assembly

    Range
    30878843..30903394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015350044.1 → XP_015205530.1  macrophage colony-stimulating factor 1 receptor

    UniProtKB/TrEMBL
    W5MZ03, W5MZ16
    Related
    ENSLOCP00000013612.1, ENSLOCT00000013641.1
    Conserved Domains (7) summary
    cd00096
    Location:411 → 496
    Ig; Immunoglobulin domain
    smart00409
    Location:411 → 499
    IG; Immunoglobulin
    smart00410
    Location:217 → 297
    IG_like; Immunoglobulin like
    pfam07714
    Location:572 → 896
    Pkinase_Tyr; Protein tyrosine kinase
    pfam13927
    Location:203 → 284
    Ig_3; Immunoglobulin domain
    cl11960
    Location:302 → 394
    Ig; Immunoglobulin domain
    cl21453
    Location:533 → 905
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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