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ap1s2 adaptor related protein complex 1 subunit sigma 2 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102693378, updated on 10-Mar-2024

Summary

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Gene symbol
ap1s2
Gene description
adaptor related protein complex 1 subunit sigma 2
See related
Ensembl:ENSLOCG00000007437
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG17
Exon count:
9
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG17 NC_023195.1 (18998645..19028827, complement)

Linkage Group LG17 - NC_023195.1Genomic Context describing neighboring genes Neighboring gene taxilin gamma Neighboring gene retinoblastoma binding protein 4, like Neighboring gene zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 Neighboring gene phosphorylase kinase, alpha 2 (liver) Neighboring gene fibulin-1-like Neighboring gene uncharacterized LOC107079439 Neighboring gene protein phosphatase, EF-hand calcium binding domain 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023195.1 Chromosome LG17 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-1 adaptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP-1 complex subunit sigma-2
Names
adaptor related protein complex 1 sigma 2 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023195.1 Reference LepOcu1 Primary Assembly

    Range
    18998645..19028827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015363793.1 → XP_015219279.1  AP-1 complex subunit sigma-2 isoform X2

    UniProtKB/TrEMBL
    W5MKW3
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma

  2. XM_015363792.1 → XP_015219278.1  AP-1 complex subunit sigma-2 isoform X1

    UniProtKB/TrEMBL
    W5MKW3
    Conserved Domains (1) summary
    cd14831
    Location:3 → 145
    AP1_sigma; AP-1 complex subunit sigma

  3. XM_015363794.1 → XP_015219280.1  AP-1 complex subunit sigma-2 isoform X3

    UniProtKB/TrEMBL
    W5MKW3
    Conserved Domains (1) summary
    cd14831
    Location:3 → 145
    AP1_sigma; AP-1 complex subunit sigma

  4. XM_015363795.1 → XP_015219281.1  AP-1 complex subunit sigma-2 isoform X4

    UniProtKB/TrEMBL
    W5MKW3
    Related
    ENSLOCP00000009022.1, ENSLOCT00000009033.1
    Conserved Domains (1) summary
    cd14831
    Location:3 → 143
    AP1_sigma; AP-1 complex subunit sigma

RNA

  1. XR_001480402.1 RNA Sequence

  2. XR_001480403.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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