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cped1 cadherin-like and PC-esterase domain containing 1 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102687565, updated on 10-Mar-2024

Summary

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Gene symbol
cped1
Gene description
cadherin-like and PC-esterase domain containing 1
See related
Ensembl:ENSLOCG00000015795
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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See cped1 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
23
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG8 NC_023186.1 (16223854..16326412)

Linkage Group LG8 - NC_023186.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102687357 Neighboring gene inhibitor of growth family, member 3 Neighboring gene wingless-type MMTV integration site family, member 16 Neighboring gene FAM3 metabolism regulating signaling molecule C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023186.1 Chromosome LG8 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cadherin-like and PC-esterase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023186.1 Reference LepOcu1 Primary Assembly

    Range
    16223854..16326412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015352418.1 → XP_015207904.1  cadherin-like and PC-esterase domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    W5NFN5
    Related
    ENSLOCP00000019444.1, ENSLOCT00000019476.1
    Conserved Domains (3) summary
    pfam12733
    Location:488 → 569
    Cadherin-like; Cadherin-like beta sandwich domain
    cl01053
    Location:657 → 922
    SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...
    cl17255
    Location:183 → 317
    ATP-grasp_4; ATP-grasp domain

  2. XM_015352417.1 → XP_015207903.1  cadherin-like and PC-esterase domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    W5NFN5
    Conserved Domains (3) summary
    pfam12733
    Location:521 → 602
    Cadherin-like; Cadherin-like beta sandwich domain
    cl01053
    Location:690 → 955
    SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...
    cl17255
    Location:216 → 350
    ATP-grasp_4; ATP-grasp domain

  3. XM_015352415.1 → XP_015207901.1  cadherin-like and PC-esterase domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    W5NFN5
    Conserved Domains (3) summary
    pfam12733
    Location:560 → 641
    Cadherin-like; Cadherin-like beta sandwich domain
    cl01053
    Location:729 → 994
    SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...
    cl17255
    Location:255 → 389
    ATP-grasp_4; ATP-grasp domain

  4. XM_015352416.1 → XP_015207902.1  cadherin-like and PC-esterase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    W5NFN5
    Conserved Domains (3) summary
    pfam12733
    Location:558 → 639
    Cadherin-like; Cadherin-like beta sandwich domain
    cl01053
    Location:727 → 992
    SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...
    cl17255
    Location:255 → 387
    ATP-grasp_4; ATP-grasp domain

  5. XM_015352419.1 → XP_015207905.1  cadherin-like and PC-esterase domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    W5NFN5
    Conserved Domains (3) summary
    pfam12733
    Location:560 → 641
    Cadherin-like; Cadherin-like beta sandwich domain
    cl01053
    Location:729 → 848
    SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...
    cl17255
    Location:255 → 389
    ATP-grasp_4; ATP-grasp domain
Nucleotide Protein
Heading Accession and Version

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