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tpcn1 two pore segment channel 1 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102687385, updated on 10-Mar-2024

Summary

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Gene symbol
tpcn1
Gene description
two pore segment channel 1
See related
Ensembl:ENSLOCG00000008448
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG20
Exon count:
28
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG20 NC_023198.1 (14382243..14408756, complement)

Linkage Group LG20 - NC_023198.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA dehydrogenase family member 11-like Neighboring gene solute carrier family 8 member B1 Neighboring gene IQ motif containing D Neighboring gene RBPJ interacting and tubulin associated 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023198.1 Chromosome LG20 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
two pore calcium channel protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023198.1 Reference LepOcu1 Primary Assembly

    Range
    14382243..14408756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015366399.1 → XP_015221885.1  two pore calcium channel protein 1

    UniProtKB/TrEMBL
    W5MPH5
    Related
    ENSLOCP00000010284.1, ENSLOCT00000010297.1
    Conserved Domains (1) summary
    pfam00520
    Location:143 → 329
    Ion_trans; Ion transport protein

  2. XM_006640469.2 → XP_006640532.1  two pore calcium channel protein 1

    UniProtKB/TrEMBL
    W5MPH5
    Conserved Domains (1) summary
    pfam00520
    Location:143 → 329
    Ion_trans; Ion transport protein
Nucleotide Protein
Heading Accession and Version

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