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dscamb Down syndrome cell adhesion molecule b [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102687003, updated on 10-Mar-2024

Summary

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Gene symbol
dscamb
Gene description
Down syndrome cell adhesion molecule b
See related
Ensembl:ENSLOCG00000001471
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
dscam
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG3
Exon count:
34
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG3 NC_023181.1 (777377..943871)

Linkage Group LG3 - NC_023181.1Genomic Context describing neighboring genes Neighboring gene FAM3 metabolism regulating signaling molecule B Neighboring gene beta-secretase 2 Neighboring gene uncharacterized LOC107076729 Neighboring gene uncharacterized LOC107076709 Neighboring gene Purkinje cell protein 4b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023181.1 Chromosome LG3 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite self-avoidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Down syndrome cell adhesion molecule
Names
DS cell adhesion molecule

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023181.1 Reference LepOcu1 Primary Assembly

    Range
    777377..943871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015341670.1 → XP_015197156.1  Down syndrome cell adhesion molecule isoform X2

    UniProtKB/TrEMBL
    W5M048
    Related
    ENSLOCP00000001755.1, ENSLOCT00000001760.1
    Conserved Domains (8) summary
    cd00096
    Location:1303 → 1369
    Ig; Immunoglobulin domain
    cd05734
    Location:707 → 784
    Ig7_DSCAM; Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)
    smart00408
    Location:240 → 300
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:44 → 113
    IG; Immunoglobulin
    smart00410
    Location:320 → 400
    IG_like; Immunoglobulin like
    cd00063
    Location:1380 → 1470
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:225 → 310
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:802 → 889
    Ig; Immunoglobulin domain

  2. XM_015341669.1 → XP_015197155.1  Down syndrome cell adhesion molecule isoform X1

    UniProtKB/TrEMBL
    W5M048
    Conserved Domains (8) summary
    cd00096
    Location:1392 → 1458
    Ig; Immunoglobulin domain
    cd05734
    Location:796 → 873
    Ig7_DSCAM; Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)
    smart00408
    Location:329 → 389
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:133 → 202
    IG; Immunoglobulin
    smart00410
    Location:409 → 489
    IG_like; Immunoglobulin like
    cd00063
    Location:1469 → 1559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:314 → 399
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:891 → 978
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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