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lrrc40 leucine rich repeat containing 40 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102685612, updated on 10-Mar-2024

Summary

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Gene symbol
lrrc40
Gene description
leucine rich repeat containing 40
See related
Ensembl:ENSLOCG00000009608
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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See lrrc40 in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
15
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG10 NC_023188.1 (23203714..23215770, complement)

Linkage Group LG10 - NC_023188.1Genomic Context describing neighboring genes Neighboring gene DEP domain containing 1 Neighboring gene leucine rich repeat containing 7 Neighboring gene serine and arginine rich splicing factor 11 Neighboring gene polyamine oxidase (exo-N4-amino) 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023188.1 Chromosome LG10 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023188.1 Reference LepOcu1 Primary Assembly

    Range
    23203714..23215770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006635042.2 → XP_006635105.1  leucine-rich repeat-containing protein 40

    UniProtKB/TrEMBL
    W5MTN3
    Related
    ENSLOCP00000011742.1, ENSLOCT00000011760.1
    Conserved Domains (3) summary
    cd00116
    Location:126 → 367
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:83 → 105
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:196 → 254
    LRR_8; Leucine rich repeat
Nucleotide Protein
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