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thsd7ba thrombospondin, type I, domain containing 7Ba [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102684416, updated on 10-Mar-2024

Summary

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Gene symbol
thsd7ba
Gene description
thrombospondin, type I, domain containing 7Ba
See related
Ensembl:ENSLOCG00000000959
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
thsd7b
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG12
Exon count:
30
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG12 NC_023190.1 (477000..670130)

Linkage Group LG12 - NC_023190.1Genomic Context describing neighboring genes Neighboring gene C-X-C motif chemokine receptor 4 Neighboring gene uncharacterized LOC107078734 Neighboring gene histamine N-methyltransferase-like Neighboring gene histamine N-methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023190.1 Chromosome LG12 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombospondin type-1 domain-containing protein 7B
Names
thrombospondin type 1 domain containing 7B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023190.1 Reference LepOcu1 Primary Assembly

    Range
    477000..670130
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015358245.1 → XP_015213731.1  thrombospondin type-1 domain-containing protein 7B isoform X1

    UniProtKB/TrEMBL
    W5LY72
    Conserved Domains (1) summary
    smart00209
    Location:188 → 235
    TSP1; Thrombospondin type 1 repeats

  2. XM_015358247.1 → XP_015213733.1  thrombospondin type-1 domain-containing protein 7B isoform X2

    UniProtKB/TrEMBL
    W5LY72
    Related
    ENSLOCP00000001079.1, ENSLOCT00000001083.1
    Conserved Domains (1) summary
    smart00209
    Location:188 → 235
    TSP1; Thrombospondin type 1 repeats

  3. XM_015358246.1 → XP_015213732.1  thrombospondin type-1 domain-containing protein 7B isoform X1

    UniProtKB/TrEMBL
    W5LY72
    Conserved Domains (1) summary
    smart00209
    Location:188 → 235
    TSP1; Thrombospondin type 1 repeats
Nucleotide Protein
Heading Accession and Version

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