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hmgb3 high mobility group box 3 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102683117, updated on 2-Nov-2023

Summary

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Gene symbol
hmgb3
Gene description
high mobility group box 3
See related
Ensembl:ENSLOCG00000014505
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
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Genomic context

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See hmgb3 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
5
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG7 NC_023185.1 (38292675..38298335)

Linkage Group LG7 - NC_023185.1Genomic Context describing neighboring genes Neighboring gene myotubularin related protein 1a Neighboring gene CD99 molecule-like 2 Neighboring gene mitochondrial ornithine transporter 1-like Neighboring gene protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023185.1 Chromosome LG7 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein B3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023185.1 Reference LepOcu1 Primary Assembly

    Range
    38292675..38298335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015351487.1 → XP_015206973.1  high mobility group protein B3

    UniProtKB/TrEMBL
    W5NB45
    Related
    ENSLOCP00000017854.1, ENSLOCT00000017886.1
    Conserved Domains (2) summary
    pfam00505
    Location:92 → 159
    HMG_box; HMG (high mobility group) box
    cl00082
    Location:13 → 78
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
Nucleotide Protein
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