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LOC102613952 histone acetyltransferase type B catalytic subunit [ Citrus sinensis (sweet orange) ]

Gene ID: 102613952, updated on 25-Jan-2024

Summary

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Gene symbol
LOC102613952
Gene description
histone acetyltransferase type B catalytic subunit
Locus tag
KPL70_000931
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Also known as
AT5G56740
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 1 NC_068556.1 (8834696..8838012)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 4 NC_023049.1 (10567720..10571065)

Chromosome 1 - NC_068556.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71 Neighboring gene hypothetical protein Neighboring gene uncharacterized LOC107176597

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets. Zeng L, et al. New Phytol, 2017 May. PMID 28294342

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H4 acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in subtelomeric heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone acetyltransferase type B catalytic subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068556.1 Reference DVS_A1.0 Primary Assembly

    Range
    8834696..8838012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006475320.4 → XP_006475383.1  histone acetyltransferase type B catalytic subunit isoform X1

    UniProtKB/TrEMBL
    A0A067EZM1
    Conserved Domains (2) summary
    pfam10394
    Location:29 → 199
    Hat1_N; Histone acetyl transferase HAT1 N-terminus
    cl27485
    Location:251 → 269
    MOZ_SAS; MOZ/SAS family

  2. XM_006475321.4 → XP_006475384.1  histone acetyltransferase type B catalytic subunit isoform X2

    UniProtKB/TrEMBL
    A0A067EZM1
    Conserved Domains (1) summary
    pfam10394
    Location:25 → 185
    Hat1_N; Histone acetyl transferase HAT1 N-terminus
Nucleotide Protein
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