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JMJD4 jumonji domain containing 4 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102576088, updated on 10-Mar-2024

Summary

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Gene symbol
JMJD4
Gene description
jumonji domain containing 4
Locus tag
Y1Q_0014269
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
JMJD4-1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 5 NC_081828.1 (215506845..215519764)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017714292.1 (1775030..1787825)

Chromosome 5 - NC_081828.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene synaptosome associated protein 47 Neighboring gene ALS2 C-terminal like Neighboring gene transmembrane inner ear Neighboring gene transfer RNA glutamine (anticodon UUG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H4R3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translational termination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-oxoglutarate and iron-dependent oxygenase JMJD4
Names
jmjC domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081828.1 Reference rAllMis1 Primary Assembly

    Range
    215506845..215519764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006272548.4 → XP_006272610.2  2-oxoglutarate and iron-dependent oxygenase JMJD4

    UniProtKB/TrEMBL
    A0A151LZI6
    Conserved Domains (1) summary
    cl21464
    Location:42 → 285
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_019480715.2 → XP_019336260.1  2-oxoglutarate and iron-dependent oxygenase JMJD4

    UniProtKB/TrEMBL
    A0A151LZI6
Nucleotide Protein
Heading Accession and Version

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