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AP1S2 adaptor related protein complex 1 subunit sigma 2 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102567825, updated on 8-May-2024

Summary

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Gene symbol
AP1S2
Gene description
adaptor related protein complex 1 subunit sigma 2
Locus tag
Y1Q_0022454
See related
EnsemblRapid:ENSAMIG00015022758
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
AP1S2-1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (322569296..322614593)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711692.1 (8361281..8407155)

Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene gastrin releasing peptide receptor Neighboring gene uncharacterized LOC132247749 Neighboring gene U4 spliceosomal RNA Neighboring gene zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 Neighboring gene collectrin, amino acid transport regulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-1 adaptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP-1 complex subunit sigma-2
Names
adaptor related protein complex 1 sigma 2 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081824.1 Reference rAllMis1 Primary Assembly

    Range
    322569296..322614593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006261073.4 → XP_006261135.1  AP-1 complex subunit sigma-2

    See identical proteins and their annotated locations for XP_006261135.1

    UniProtKB/TrEMBL
    A0A151N0Q6
    Related
    ENSAMIP00015031413.1, ENSAMIT00015043203.1
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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