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LOC102544218 opsin 1, long wave sensitive [ Vicugna pacos (alpaca) ]

Gene ID: 102544218, updated on 16-Nov-2023

Summary

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Gene symbol
LOC102544218
Gene description
opsin 1, long wave sensitive
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Also known as
OPN1LW
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Genomic context

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Location:
chromosome: X
Exon count:
6
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) X Unlocalized Scaffold NW_021964237.1 (778718..790841)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005883068.1 (40847..52970, complement)

NW_021964237.1Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor associated kinase 1 Neighboring gene methyl-CpG binding protein 2 Neighboring gene U1 spliceosomal RNA Neighboring gene testis expressed 28 Neighboring gene transketolase like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phototransduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor outer segment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
medium-wave-sensitive opsin 1
Names
opsin 1 (cone pigments), long-wave-sensitive

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964237.1 Reference VicPac3.1 Primary Assembly

    Range
    778718..790841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006218499.1 → XP_006218561.1  medium-wave-sensitive opsin 1

    UniProtKB/TrEMBL
    A0A6I9IPN1
    Conserved Domains (2) summary
    cd14964
    Location:55 → 81
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:42 → 333
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
Nucleotide Protein
Heading Accession and Version

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