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LOC102542774 sodium channel protein type 9 subunit alpha [ Vicugna pacos (alpaca) ]

Gene ID: 102542774, updated on 16-Nov-2023

Summary

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Gene symbol
LOC102542774
Gene description
sodium channel protein type 9 subunit alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Also known as
SCN9A
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Genomic context

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See LOC102542774 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
26
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 5 Unlocalized Scaffold NW_021964164.1 (56443595..56570770)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882728.1 (538433..665784, complement)

NW_021964164.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene DNA primase small subunit-like Neighboring gene sodium voltage-gated channel alpha subunit 7 Neighboring gene U6 spliceosomal RNA Neighboring gene sodium channel protein type 1 subunit alpha Neighboring gene tetratricopeptide repeat domain 21B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated sodium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane depolarization during action potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuronal action potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated sodium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium channel protein type 9 subunit alpha
Names
sodium channel, voltage-gated, type IX, alpha subunit
sodium voltage-gated channel alpha subunit 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964164.1 Reference VicPac3.1 Primary Assembly

    Range
    56443595..56570770
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031677766.1 → XP_031533626.1  sodium channel protein type 9 subunit alpha

    UniProtKB/TrEMBL
    A0A6J3ALX5
    Conserved Domains (5) summary
    cd13433
    Location:1415 → 1461
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1148 → 1423
    Ion_trans; Ion transport protein
    pfam06512
    Location:942 → 1144
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:449 → 654
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1660 → 1707
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
Nucleotide Protein
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