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HAPLN4 hyaluronan and proteoglycan link protein 4 [ Vicugna pacos (alpaca) ]

Gene ID: 102540436, updated on 10-Mar-2024

Summary

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Gene symbol
HAPLN4
Gene description
hyaluronan and proteoglycan link protein 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
4
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 22 Unlocalized Scaffold NW_021964202.1 (14801428..14804924)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882716.1 (14835622..14839091)

NW_021964202.1Genomic Context describing neighboring genes Neighboring gene SURP and G-patch domain containing 1 Neighboring gene transmembrane 6 superfamily member 2 Neighboring gene neurocan Neighboring gene nuclear receptor 2C2 associated protein Neighboring gene regulatory factor X associated ankyrin containing protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hyaluronan and proteoglycan link protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964202.1 Reference VicPac3.1 Primary Assembly

    Range
    14801428..14804924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015234878.2 → XP_015090364.1  hyaluronan and proteoglycan link protein 4

    UniProtKB/TrEMBL
    A0A6J0ACJ8
    Conserved Domains (2) summary
    cl02612
    Location:163 → 189
    Link_Domain; The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor ...
    cl11960
    Location:60 → 164
    Ig; Immunoglobulin domain
Nucleotide Protein
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