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PDZRN3 PDZ domain containing ring finger 3 [ Vicugna pacos (alpaca) ]

Gene ID: 102533943, updated on 10-Mar-2024

Summary

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Gene symbol
PDZRN3
Gene description
PDZ domain containing ring finger 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) 17 Unlocalized Scaffold NW_021964193.1 (13770780..13993706)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882703.1 (19938415..20160359, complement)

NW_021964193.1Genomic Context describing neighboring genes Neighboring gene contactin 3 Neighboring gene uncharacterized LOC116283895 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene uncharacterized LOC116283942 Neighboring gene protein phosphatase 4 regulatory subunit 2 Neighboring gene glucoside xylosyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuromuscular junction development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuromuscular junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase PDZRN3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021964193.1 Reference VicPac3.1 Primary Assembly

    Range
    13770780..13993706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015234619.2 → XP_015090105.2  E3 ubiquitin-protein ligase PDZRN3

    UniProtKB/TrEMBL
    A0A6J0ACA5
    Conserved Domains (6) summary
    PHA03269
    Location:754 → 821
    PHA03269; envelope glycoprotein C; Provisional
    smart00228
    Location:246 → 338
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:420 → 488
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd00162
    Location:18 → 56
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl17238
    Location:17 → 58
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl19105
    Location:69 → 132
    Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...
Nucleotide Protein
Heading Accession and Version

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