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PCDH19 protocadherin 19 [ Vicugna pacos (alpaca) ]

Gene ID: 102529327, updated on 10-Mar-2024

Summary

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Gene symbol
PCDH19
Gene description
protocadherin 19
Gene type
protein coding
RefSeq status
MODEL
Organism
Vicugna pacos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna
Orthologs
human mouse all
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Genomic context

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See PCDH19 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current VicPac3.1 (GCF_000164845.3) Unplaced Scaffold NW_021965348.1 (4859931..4959089, complement)
101 previous assembly Vicugna_pacos-2.0.1 (GCF_000164845.1) Unplaced Scaffold NW_005882811.1 (4870510..4965029, complement)

NW_021965348.1Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein P0 pseudogene Neighboring gene myelin-associated neurite-outgrowth inhibitor-like Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene tetraspanin 6 Neighboring gene tenomodulin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vicugna pacos Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VicPac3.1 Primary Assembly

Genomic

  1. NW_021965348.1 Reference VicPac3.1 Primary Assembly

    Range
    4859931..4959089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015244423.2 → XP_015099909.1  protocadherin-19 isoform X5

    UniProtKB/TrEMBL
    A0A6J0AU04
    Conserved Domains (2) summary
    cd11304
    Location:242 → 342
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:27 → 106
    Cadherin_2; Cadherin-like

  2. XM_006210249.3 → XP_006210311.1  protocadherin-19 isoform X4

    UniProtKB/TrEMBL
    A0A6I9IF18
    Conserved Domains (2) summary
    cd11304
    Location:242 → 342
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:27 → 106
    Cadherin_2; Cadherin-like

  3. XM_006210248.3 → XP_006210310.1  protocadherin-19 isoform X3

    UniProtKB/TrEMBL
    A0A6I9IDT6
    Conserved Domains (2) summary
    cd11304
    Location:242 → 342
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:27 → 106
    Cadherin_2; Cadherin-like

  4. XM_031671470.1 → XP_031527330.1  protocadherin-19 isoform X2

    UniProtKB/TrEMBL
    A0A6J2ZZI5
    Conserved Domains (2) summary
    cd11304
    Location:242 → 342
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:27 → 106
    Cadherin_2; Cadherin-like

  5. XM_006210247.3 → XP_006210309.1  protocadherin-19 isoform X1

    UniProtKB/TrEMBL
    A0A6I9IGY2
    Conserved Domains (2) summary
    cd11304
    Location:242 → 342
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:27 → 106
    Cadherin_2; Cadherin-like
Nucleotide Protein
Heading Accession and Version

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